Glyma20g32030 - SoyBase

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Report for Sequence Feature Glyma20g32030

Feature Type:	gene_model
Chromosome:	Gm20
Start:	40646882
stop:	40654765
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g32030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17530	AT	Annotation by Michelle Graham. TAIR10: phosphoglucosamine mutase family protein \| chr5:5777716-5781863 FORWARD LENGTH=614	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006048	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylglucosamine biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004610	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoacetylglucosamine mutase activity	SoyBase	N/A	ISS
GO:0016868	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases	SoyBase	N/A	ISS
KOG1220	KOG	Phosphoglucomutase/phosphomannomutase	JGI		ISS
PTHR22573	Panther	PHOSPHOHEXOMUTASE FAMILY MEMBER	JGI		ISS
PTHR22573:SF4	Panther	PHOSPHOGLUCOMUTASE	JGI		ISS
PF02878	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	JGI		ISS
PF02879	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	JGI		ISS
PF02880	PFAM	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	JGI		ISS
UniRef100_G7I385	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglucosamine mutase n=1 Tax=Medicago truncatula RepID=G7I385_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DB0F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DB0F related cluster n=1 Tax=unknown RepID=UPI000233DB0F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g32030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g32030

Paralog	Evidence	Comments
Glyma10g35490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g32030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g179900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g32030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g32030

Limit To All Plant Sequences

>Glyma20g32030.2   sequence type=transcript   gene model=Glyma20g32030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACGTGAGCAAGGGTTGTTGTAAAGTGGAGTTGGTGGAACTAAGAGAAGAGAAGAGAAGGTTACAGAAAAACAAACACTTATCTCTGTTTCTCCGTCTTACGGCAATTGAAGGAAGCACTATCTCTGCAACTTCCGTCACATTCACATGGCAGCAACATCAGGGAAGATTGTCCAATTTTTTTTTGTGTCAAACTGCCACCAACAGAATACACAGGGTCGAAGGGACTATTGTTTTGCCCCTTCTCGGCTACGGAAGTTGGCATGGACTGCCTCTTCCATGCAATTCCGCACTTTATTCAAACCCCAGAATCATTTTAGTGTCCAGAGAAATTTTCACTGCAATGCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAAAGCTTCAAAATGGCAGTGACATTCGTGGTGTGGCTGTTGATGGTGTTGAGGGAGAGCCAGTTAACCTCACTGAACCTGTTGCCGAAGCAATAGGAGCTGCTTTTGCTGCATGGTTAGTGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCATTTTTGTGTCCTGCTGATGGATCTATTATGATAACAGCAAGTCATCTTCCTTTCAACAGGAATGGATTCAAATTTTTCACAAATGCTGGTGGGCTTGGGAAGGCTGACATCAAAGATATCTTAGAGCGAGCTGCGGACATATACAATCGATTTACAGAAGAAAGTTTGACAAATTCAGAGAGAAAAGCTTCACTATCTATTAAGAAAGTTGATTACATGATTGTTTATACATCTGATCTAGTAAAAGCAGTTCGCAAAGCAGCTGGAAACATAGAGAAACCATTGGGGGGTTTCCATATAGTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCTGCAAAGGTTCTGGAACCTCTGGGGGCAATAACTTCTGGTAGTCAATTTTTGGAGCCTGATGGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTTTGATACTGATGTGGACAGATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAACATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGGTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGAATTCTATTGGTGAGGAGTCACATTTGGCAATTGAAACTAGTGGACATGGAGCTCTCAAGGAAAATCATTGGCTTGATGATGGCGCATACCTAATGGTCAAGATCTTAAATAAACTTGCTTCTGCAAGAGCTTCTGGAAAGGGTGGTGGAAGTAAGGTTTTGACTGATCTAATAGACGGACTTCAGGAACCAGATTTTGCTGTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGGCACCTAGTAATGATGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCTGTGAAGGACTTTGCAGGTTTAGACACATCAGCCTTGAACAAGTTTGTAGGAGCATCATAATTGGATGCTTCATACAATAATTGAGTCTGGTGCTGGAGAGTGCTTTCACTTCTATTTATGCATTATACAAAGAGGTTCTCTATACGTGCATCAGCGGCAAGAGGATGAATTAAAGACAGTGAACTAGAGTTACCTCTAAATGGAGTATGGTCTGTTGTGGACTAGAAATATCAGAAATCTCTACTATAGAATTTTCATGAGACGTCACATTTTTGAGATCACTGTGATTAAATGTATGGTGTAATTTTTGTTGTGCTTTGCCATTGAATACTATTGACCCTTTTCTTATATGCATTTGGACTCTCGTAGGCTCACTGATAAGATGTGCCCTTTCCATTTGCGGAGAGAATAGTCTTGGTTATCAACTTCTCTTGACAAGAAAAAAGTGAAAATTGAGAAAATGTAAAAATTAAAAATGAAATGACGAGTCCTCTTGTTATTAAAG

Coding sequences of Glyma20g32030

Limit To All Plant Sequences

>Glyma20g32030.1   sequence type=CDS   gene model=Glyma20g32030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAAAGCTTCAAAATGGCAGTGACATTCGTGGTGTGGCTGTTGATGGTGTTGAGGGAGAGCCAGTTAACCTCACTGAACCTGTTGCCGAAGCAATAGGAGCTGCTTTTGCTGCATGGTTAGTGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCATTTTTGTGTCCTGCTGATGGATCTATTATGATAACAGCAAGTCATCTTCCTTTCAACAGGAATGGATTCAAATTTTTCACAAATGCTGGTGGGCTTGGGAAGGCTGACATCAAAGATATCTTAGAGCGAGCTGCGGACATATACAATCGATTTACAGAAGAAAGTTTGACAAATTCAGAGAGAAAAGCTTCACTATCTATTAAGAAAGTTGATTACATGATTGTTTATACATCTGATCTAGTAAAAGCAGTTCGCAAAGCAGCTGGAAACATAGAGAAACCATTGGGGGGTTTCCATATAGTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCTGCAAAGGTTCTGGAACCTCTGGGGGCAATAACTTCTGGTAGTCAATTTTTGGAGCCTGATGGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTTTGATACTGATGTGGACAGATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAACATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGGTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGAATTCTATTGGTGAGGAGTCACATTTGGCAATTGAAACTAGTGGACATGGAGCTCTCAAGGAAAATCATTGGCTTGATGATGGCGCATACCTAATGGTCAAGATCTTAAATAAACTTGCTTCTGCAAGAGCTTCTGGAAAGGGTGGTGGAAGTAAGGTTTTGACTGATCTAATAGACGGACTTCAGGAACCAGATTTTGCTGTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGGCACCTAGTAATGATGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCTGTGAAGGACTTTGCAGGTTTAGACACATCAGCCTTGAACAAGTTTGTAGGAGCATCATAA

>Glyma20g32030.2   sequence type=CDS   gene model=Glyma20g32030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAACATCAGGGAAGATTGTCCAATTTTTTTTTGTGTCAAACTGCCACCAACAGAATACACAGGGTCGAAGGGACTATTGTTTTGCCCCTTCTCGGCTACGGAAGTTGGCATGGACTGCCTCTTCCATGCAATTCCGCACTTTATTCAAACCCCAGAATCATTTTAGTGTCCAGAGAAATTTTCACTGCAATGCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAAAGCTTCAAAATGGCAGTGACATTCGTGGTGTGGCTGTTGATGGTGTTGAGGGAGAGCCAGTTAACCTCACTGAACCTGTTGCCGAAGCAATAGGAGCTGCTTTTGCTGCATGGTTAGTGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCATTTTTGTGTCCTGCTGATGGATCTATTATGATAACAGCAAGTCATCTTCCTTTCAACAGGAATGGATTCAAATTTTTCACAAATGCTGGTGGGCTTGGGAAGGCTGACATCAAAGATATCTTAGAGCGAGCTGCGGACATATACAATCGATTTACAGAAGAAAGTTTGACAAATTCAGAGAGAAAAGCTTCACTATCTATTAAGAAAGTTGATTACATGATTGTTTATACATCTGATCTAGTAAAAGCAGTTCGCAAAGCAGCTGGAAACATAGAGAAACCATTGGGGGGTTTCCATATAGTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCTGCAAAGGTTCTGGAACCTCTGGGGGCAATAACTTCTGGTAGTCAATTTTTGGAGCCTGATGGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTTTGATACTGATGTGGACAGATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAACATCCTGGAACAACTATTGTCACAGACAGTGTGACTTCTGATGGGCTTACCACGTTTATTGAGAAGAAACTTGGTGGCAGACACCATCGGTTCAAAAGAGGCTACAAAAATGTGATTGATGAAGCTATTCGTTTGAATTCTATTGGTGAGGAGTCACATTTGGCAATTGAAACTAGTGGACATGGAGCTCTCAAGGAAAATCATTGGCTTGATGATGGCGCATACCTAATGGTCAAGATCTTAAATAAACTTGCTTCTGCAAGAGCTTCTGGAAAGGGTGGTGGAAGTAAGGTTTTGACTGATCTAATAGACGGACTTCAGGAACCAGATTTTGCTGTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAATTGGCTCTGATCCAAGTCTGCACAAGGCTCCTGTGAACTATGAAGGGGTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGGCACCTAGTAATGATGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCTGTGAAGGACTTTGCAGGTTTAGACACATCAGCCTTGAACAAGTTTGTAGGAGCATCATAA

Predicted protein sequences of Glyma20g32030

Limit To All Plant Sequences

>Glyma20g32030.1   sequence type=predicted peptide   gene model=Glyma20g32030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASASATAVPYLDKTDFLKLQNGSDIRGVAVDGVEGEPVNLTEPVAEAIGAAFAAWLVEKKKADASQHLRVSIGHDSRISAKLLQNAISRGLAGGGLEVVHYGLASTPAMFNSTLTKNEAFLCPADGSIMITASHLPFNRNGFKFFTNAGGLGKADIKDILERAADIYNRFTEESLTNSERKASLSIKKVDYMIVYTSDLVKAVRKAAGNIEKPLGGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGLFPNHIPNPEDKTAMKAITQAVLDNKVDLGIIFDTDVDRSAAVDFTGREFNRNRLIALMAAIVLEEHPGTTIVTDSVTSDGLTTFIEKKLGGRHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMVKILNKLASARASGKGGGSKVLTDLIDGLQEPDFAVELRLKINQNHPDLKGGSFREYGEAVLKHLENSIGSDPSLHKAPVNYEGVRVSGYGGWFLLRLSLHDPVLPLNIEAPSNDDAVKLGLAVLAAVKDFAGLDTSALNKFVGAS*

>Glyma20g32030.2   sequence type=predicted peptide   gene model=Glyma20g32030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATSGKIVQFFFVSNCHQQNTQGRRDYCFAPSRLRKLAWTASSMQFRTLFKPQNHFSVQRNFHCNASASATAVPYLDKTDFLKLQNGSDIRGVAVDGVEGEPVNLTEPVAEAIGAAFAAWLVEKKKADASQHLRVSIGHDSRISAKLLQNAISRGLAGGGLEVVHYGLASTPAMFNSTLTKNEAFLCPADGSIMITASHLPFNRNGFKFFTNAGGLGKADIKDILERAADIYNRFTEESLTNSERKASLSIKKVDYMIVYTSDLVKAVRKAAGNIEKPLGGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGLFPNHIPNPEDKTAMKAITQAVLDNKVDLGIIFDTDVDRSAAVDFTGREFNRNRLIALMAAIVLEEHPGTTIVTDSVTSDGLTTFIEKKLGGRHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMVKILNKLASARASGKGGGSKVLTDLIDGLQEPDFAVELRLKINQNHPDLKGGSFREYGEAVLKHLENSIGSDPSLHKAPVNYEGVRVSGYGGWFLLRLSLHDPVLPLNIEAPSNDDAVKLGLAVLAAVKDFAGLDTSALNKFVGAS*

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